Software and data courtesy of the Giddings Lab (and all
the people who have supported us, like NIH, NSF, DOE, and
many others).
Heptameric Frequency Analysis Program for finding
frameshift sites. Written in Java.
Basefinder is a software system for Basecalling and trace analysis. ShapeFinder is an extension of the BaseFinder framework, with new algorithms that allow high-throughput SHAPE data processing.
Data associated with our study of peptide mass
fingerprinting
Data from our study of Fragmentation in MALDI TOF/TOF
MS/MS
StatPackage, see its web page under Software
Chemoscape source code
Chemoscape Supplementary Materials
HMM_Score package, as described in our Bioinformatics
paper, Khatun et al, Bioinformatics 2008, DOI:
10.1093/bioinformatics/btn011
This is an installer that will install the model source code and executable
on to your computer. Mac or Windows is supported.